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Build Information

Failed to build BioSwift, reference master (ac04fb), with Swift 6.3 for macOS (SPM) on 11 Apr 2026 07:25:52 UTC.

Build Command

env DEVELOPER_DIR=/Applications/Xcode-26.4.0.app xcrun swift build --arch arm64

Build Log

========================================
RunAll
========================================
Builder version: 4.70.0
Interrupt handler set up.
========================================
Checkout
========================================
Clone URL: https://github.com/valdirunars/bioswift.git
Reference: master
Initialized empty Git repository in /Users/admin/builder/spi-builder-workspace/.git/
From https://github.com/valdirunars/bioswift
 * branch            master     -> FETCH_HEAD
 * [new branch]      master     -> origin/master
HEAD is now at ac04fb2 Merge pull request #3 from oceanexplains/master
Cloned https://github.com/valdirunars/bioswift.git
Revision (git rev-parse @):
ac04fb2d0fe16eb23318b6f99e0cd9ee3db59afb
SUCCESS checkout https://github.com/valdirunars/bioswift.git at master
Fetching http://github.com/valdirunars/BigIntCompress.git
Fetching http://github.com/attaswift/BigInt.git
Fetching https://github.com/attaswift/SipHash
[1/440] Fetching siphash
[116/536] Fetching siphash, bigintcompress
[247/5414] Fetching siphash, bigintcompress, bigint
Fetched http://github.com/valdirunars/BigIntCompress.git from cache (0.81s)
[155/5318] Fetching siphash, bigint
Fetched http://github.com/attaswift/BigInt.git from cache (1.70s)
Fetched https://github.com/attaswift/SipHash from cache (1.70s)
Computing version for http://github.com/attaswift/BigInt.git
Computed http://github.com/attaswift/BigInt.git at 3.0.1 (4.14s)
Computing version for http://github.com/valdirunars/BigIntCompress.git
Computed http://github.com/valdirunars/BigIntCompress.git at 1.0.2 (0.75s)
Computing version for https://github.com/attaswift/SipHash
Computed https://github.com/attaswift/SipHash at 1.2.0 (0.88s)
Creating working copy for http://github.com/valdirunars/BigIntCompress.git
Working copy of http://github.com/valdirunars/BigIntCompress.git resolved at 1.0.2
Creating working copy for https://github.com/attaswift/SipHash
Working copy of https://github.com/attaswift/SipHash resolved at 1.2.0
Creating working copy for http://github.com/attaswift/BigInt.git
Working copy of http://github.com/attaswift/BigInt.git resolved at 3.0.1
========================================
ResolveProductDependencies
========================================
Resolving dependencies ...
{
  "identity": ".resolve-product-dependencies",
  "name": "resolve-dependencies",
  "url": "/Users/admin/builder/spi-builder-workspace/.resolve-product-dependencies",
  "version": "unspecified",
  "path": "/Users/admin/builder/spi-builder-workspace/.resolve-product-dependencies",
  "traits": [
    "default"
  ],
  "dependencies": [
    {
      "identity": "bioswift",
      "name": "BioSwift",
      "url": "https://github.com/valdirunars/bioswift.git",
      "version": "unspecified",
      "path": "/Users/admin/builder/spi-builder-workspace/.resolve-product-dependencies/.build/checkouts/bioswift",
      "traits": [
        "default"
      ],
      "dependencies": [
        {
          "identity": "bigintcompress",
          "name": "BigIntCompress",
          "url": "http://github.com/valdirunars/BigIntCompress.git",
          "version": "1.0.2",
          "path": "/Users/admin/builder/spi-builder-workspace/.resolve-product-dependencies/.build/checkouts/BigIntCompress",
          "traits": [
            "default"
          ],
          "dependencies": [
          ]
        },
        {
          "identity": "bigint",
          "name": "BigInt",
          "url": "http://github.com/attaswift/BigInt.git",
          "version": "3.1.0",
          "path": "/Users/admin/builder/spi-builder-workspace/.resolve-product-dependencies/.build/checkouts/BigInt",
          "traits": [
            "default"
          ],
          "dependencies": [
            {
              "identity": "siphash",
              "name": "SipHash",
              "url": "https://github.com/attaswift/SipHash",
              "version": "1.2.2",
              "path": "/Users/admin/builder/spi-builder-workspace/.resolve-product-dependencies/.build/checkouts/SipHash",
              "traits": [
                "default"
              ],
              "dependencies": [
              ]
            }
          ]
        }
      ]
    }
  ]
}
Fetching https://github.com/valdirunars/bioswift.git
[1/1120] Fetching bioswift
Fetched https://github.com/valdirunars/bioswift.git from cache (2.85s)
Fetching http://github.com/valdirunars/BigIntCompress.git from cache
Fetching http://github.com/attaswift/BigInt.git from cache
Fetched http://github.com/attaswift/BigInt.git from cache (0.63s)
Fetched http://github.com/valdirunars/BigIntCompress.git from cache (0.63s)
Computing version for http://github.com/valdirunars/BigIntCompress.git
Computed http://github.com/valdirunars/BigIntCompress.git at 1.0.2 (0.69s)
Computing version for http://github.com/attaswift/BigInt.git
Computed http://github.com/attaswift/BigInt.git at 3.1.0 (0.68s)
Fetching https://github.com/attaswift/SipHash from cache
Fetched https://github.com/attaswift/SipHash from cache (0.44s)
Computing version for https://github.com/attaswift/SipHash
Computed https://github.com/attaswift/SipHash at 1.2.2 (0.49s)
Creating working copy for http://github.com/attaswift/BigInt.git
Working copy of http://github.com/attaswift/BigInt.git resolved at 3.1.0
Creating working copy for https://github.com/valdirunars/bioswift.git
Working copy of https://github.com/valdirunars/bioswift.git resolved at master (ac04fb2)
Creating working copy for https://github.com/attaswift/SipHash
Working copy of https://github.com/attaswift/SipHash resolved at 1.2.2
Creating working copy for http://github.com/valdirunars/BigIntCompress.git
Working copy of http://github.com/valdirunars/BigIntCompress.git resolved at 1.0.2
warning: '.resolve-product-dependencies': dependency 'bioswift' is not used by any target
Found 2 product dependencies
  - BigIntCompress
  - BigInt
========================================
Build
========================================
Selected platform:         macosSpm
Swift version:             6.3
Building package at path:  $PWD
https://github.com/valdirunars/bioswift.git
Running build ...
env DEVELOPER_DIR=/Applications/Xcode-26.4.0.app xcrun swift build --arch arm64
Building for debugging...
[0/9] Write sources
[4/9] Write swift-version--6988338F2F200930.txt
[6/19] Compiling SipHash SipHasher.swift
[7/19] Compiling SipHash SipHashable.swift
[8/19] Compiling BigIntCompress Extensions.swift
[9/19] Compiling BigIntCompress Protocols.swift
[10/19] Compiling BigIntCompress BigIntCompress.swift
[11/19] Emitting module BigIntCompress
[12/19] Compiling BigIntCompress DecodeError.swift
[13/19] Compiling SipHash RandomUInt64.swift
[14/19] Emitting module SipHash
[15/19] Compiling SipHash Primitive Types.swift
[15/19] Write Objects.LinkFileList
[16/19] Linking libSipHash.dylib
[18/40] Compiling BigInt Integer Conversion.swift
[19/40] Compiling BigInt Multiplication.swift
[20/40] Compiling BigInt Strideable.swift
[21/40] Compiling BigInt String Conversion.swift
[22/42] Emitting module BigInt
[23/42] Compiling BigInt Prime Test.swift
[24/42] Compiling BigInt Random.swift
[25/42] Compiling BigInt Exponentiation.swift
[26/42] Compiling BigInt Floating Point Conversion.swift
[27/42] Compiling BigInt GCD.swift
[28/42] Compiling BigInt Hashable.swift
[29/42] Compiling BigInt Bitwise Ops.swift
[30/42] Compiling BigInt Codable.swift
[31/42] Compiling BigInt Comparable.swift
[32/42] Compiling BigInt Shifts.swift
[33/42] Compiling BigInt Square Root.swift
[34/42] Compiling BigInt Addition.swift
[35/42] Compiling BigInt BigInt.swift
[36/42] Compiling BigInt BigUInt.swift
[37/42] Compiling BigInt Data Conversion.swift
[38/42] Compiling BigInt Division.swift
[39/42] Compiling BigInt Subtraction.swift
[40/42] Compiling BigInt Words and Bits.swift
[40/42] Write Objects.LinkFileList
[41/42] Linking libBigInt.dylib
error: emit-module command failed with exit code 1 (use -v to see invocation)
[43/62] Compiling BioSwift Parser.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
[44/62] Compiling BioSwift ParserError.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
[45/62] Compiling BioSwift FASTAToken.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
[46/62] Compiling BioSwift Genome+Foundation.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
[47/62] Compiling BioSwift Protein+BioSequence.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:43:16: warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'Protein' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 41 |     }
 42 |
 43 |     public var hashValue: Int {
    |                `- warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'Protein' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 44 |         return self.bigIntValue.hashValue
 45 |     }
[#DeprecatedDeclaration]: <https://docs.swift.org/compiler/documentation/diagnostics/deprecated-declaration>
[48/62] Compiling BioSwift Protein.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:43:16: warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'Protein' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 41 |     }
 42 |
 43 |     public var hashValue: Int {
    |                `- warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'Protein' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 44 |         return self.bigIntValue.hashValue
 45 |     }
[#DeprecatedDeclaration]: <https://docs.swift.org/compiler/documentation/diagnostics/deprecated-declaration>
[49/62] Compiling BioSwift Extensions.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/Extensions.swift:16:38: warning: 'index(of:)' is deprecated: renamed to 'firstIndex(of:)' [#DeprecatedDeclaration]
14 |         for element in self {
15 |             while self.contains(element) {
16 |                 guard let idx = self.index(of: element) else { break }
   |                                      |- warning: 'index(of:)' is deprecated: renamed to 'firstIndex(of:)' [#DeprecatedDeclaration]
   |                                      `- note: use 'firstIndex(of:)' instead
17 |                 lastIndex = idx
18 |                 self.remove(at: idx)
[#DeprecatedDeclaration]: <https://docs.swift.org/compiler/documentation/diagnostics/deprecated-declaration>
[50/62] Compiling BioSwift FASTAParser.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/Extensions.swift:16:38: warning: 'index(of:)' is deprecated: renamed to 'firstIndex(of:)' [#DeprecatedDeclaration]
14 |         for element in self {
15 |             while self.contains(element) {
16 |                 guard let idx = self.index(of: element) else { break }
   |                                      |- warning: 'index(of:)' is deprecated: renamed to 'firstIndex(of:)' [#DeprecatedDeclaration]
   |                                      `- note: use 'firstIndex(of:)' instead
17 |                 lastIndex = idx
18 |                 self.remove(at: idx)
[#DeprecatedDeclaration]: <https://docs.swift.org/compiler/documentation/diagnostics/deprecated-declaration>
[51/62] Compiling BioSwift BioSequence.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
[52/62] Compiling BioSwift ByteRepresentable.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
[53/62] Compiling BioSwift AminoAcid.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
[54/62] Compiling BioSwift BigIntConvertible.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
[55/62] Compiling BioSwift BioIOToken.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
[56/62] Compiling BioSwift Genome.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:91:22: warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 89 | extension Genome {
 90 |
 91 |     public typealias CompressionNumber = BigInt
    |                      `- warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 92 |
 93 |     public static var possibleComponents: [Nucleotide] {
/Users/admin/builder/spi-builder-workspace/.build/checkouts/BigIntCompress/Sources/BigIntCompress/Protocols.swift:18:20: note: 'CompressionNumber' declared here
16 |
17 | public protocol Compressable: Collection where Element: Equatable {
18 |     associatedtype CompressionNumber: BigIntType, BinaryInteger
   |                    `- note: 'CompressionNumber' declared here
19 |
20 |     static var possibleComponents: [Element] { get }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
[57/62] Compiling BioSwift Nucleotide.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:91:22: warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 89 | extension Genome {
 90 |
 91 |     public typealias CompressionNumber = BigInt
    |                      `- warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 92 |
 93 |     public static var possibleComponents: [Nucleotide] {
/Users/admin/builder/spi-builder-workspace/.build/checkouts/BigIntCompress/Sources/BigIntCompress/Protocols.swift:18:20: note: 'CompressionNumber' declared here
16 |
17 | public protocol Compressable: Collection where Element: Equatable {
18 |     associatedtype CompressionNumber: BigIntType, BinaryInteger
   |                    `- note: 'CompressionNumber' declared here
19 |
20 |     static var possibleComponents: [Element] { get }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
[58/62] Emitting module BioSwift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:75:1: warning: extension declares a conformance of imported type 'BigInt' to imported protocol 'BigIntType'; this will not behave correctly if the owners of 'BigInt' introduce this conformance in the future
 73 | // MARK: Compressable
 74 |
 75 | extension BigInt: BigIntType {
    | |- warning: extension declares a conformance of imported type 'BigInt' to imported protocol 'BigIntType'; this will not behave correctly if the owners of 'BigInt' introduce this conformance in the future
    | `- note: add '@retroactive' to silence this warning
 76 |     public var hexString: String {
 77 |         return String(self, radix: 16)
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:91:22: warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 89 | extension Genome {
 90 |
 91 |     public typealias CompressionNumber = BigInt
    |                      `- warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 92 |
 93 |     public static var possibleComponents: [Nucleotide] {
/Users/admin/builder/spi-builder-workspace/.build/checkouts/BigIntCompress/Sources/BigIntCompress/Protocols.swift:18:20: note: 'CompressionNumber' declared here
16 |
17 | public protocol Compressable: Collection where Element: Equatable {
18 |     associatedtype CompressionNumber: BigIntType, BinaryInteger
   |                    `- note: 'CompressionNumber' declared here
19 |
20 |     static var possibleComponents: [Element] { get }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:98:1: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
 96 | }
 97 |
 98 | extension Protein: Compressable {
    | `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
 99 |     public typealias CompressionNumber = BigInt
100 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:98:1: error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
 96 | }
 97 |
 98 | extension Protein: Compressable {
    | `- error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
 99 |     public typealias CompressionNumber = BigInt
100 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: note: mark the type alias as 'public' to satisfy the requirement
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:98:1: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
 96 | }
 97 |
 98 | extension Protein: Compressable {
    | `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
 99 |     public typealias CompressionNumber = BigInt
100 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:23:16: error: property cannot be declared public because its type uses an internal type
21 |     public internal(set) var  bigIntValue: BigInt
22 |
23 |     public var startIndex: Index {
   |                `- error: property cannot be declared public because its type uses an internal type
24 |         return self.units.startIndex
25 |     }
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:27:16: error: property cannot be declared public because its type uses an internal type
25 |     }
26 |
27 |     public var endIndex: Index {
   |                `- error: property cannot be declared public because its type uses an internal type
28 |         return self.units.endIndex
29 |     }
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:76:12: error: subscript cannot be declared public because its index uses an internal type
74 |     }
75 |
76 |     public subscript(index: Index) -> Nucleotide {
   |            `- error: subscript cannot be declared public because its index uses an internal type
77 |         return self.complementBit ? !self.units[index] : self.units[index]
78 |     }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:43:16: warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'DNAGenome' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 41 |     }
 42 |
 43 |     public var hashValue: Int {
    |                `- warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'DNAGenome' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 44 |         return self.bigIntValue.hashValue
 45 |     }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:43:16: warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'Protein' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 41 |     }
 42 |
 43 |     public var hashValue: Int {
    |                `- warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'Protein' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 44 |         return self.bigIntValue.hashValue
 45 |     }
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:28:16: error: property cannot be declared public because its type uses an internal type
26 |     public internal(set) var  bigIntValue: BigInt
27 |
28 |     public var startIndex: Index {
   |                `- error: property cannot be declared public because its type uses an internal type
29 |         return self.units.startIndex
30 |     }
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:32:16: error: property cannot be declared public because its type uses an internal type
30 |     }
31 |
32 |     public var endIndex: Index {
   |                `- error: property cannot be declared public because its type uses an internal type
33 |         return self.units.endIndex
34 |     }
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:81:12: error: subscript cannot be declared public because its index uses an internal type
79 |     }
80 |
81 |     public subscript(index: Index) -> Nucleotide {
   |            `- error: subscript cannot be declared public because its index uses an internal type
82 |         return self.complementBit ? !self.units[index] : self.units[index]
83 |     }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:43:16: warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'RNAGenome' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 41 |     }
 42 |
 43 |     public var hashValue: Int {
    |                `- warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'RNAGenome' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 44 |         return self.bigIntValue.hashValue
 45 |     }
[#DeprecatedDeclaration]: <https://docs.swift.org/compiler/documentation/diagnostics/deprecated-declaration>
[59/62] Compiling BioSwift CharConvertible.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:23:16: error: property cannot be declared public because its type uses an internal type
21 |     public internal(set) var  bigIntValue: BigInt
22 |
23 |     public var startIndex: Index {
   |                `- error: property cannot be declared public because its type uses an internal type
24 |         return self.units.startIndex
25 |     }
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:27:16: error: property cannot be declared public because its type uses an internal type
25 |     }
26 |
27 |     public var endIndex: Index {
   |                `- error: property cannot be declared public because its type uses an internal type
28 |         return self.units.endIndex
29 |     }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:91:22: warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 89 | extension Genome {
 90 |
 91 |     public typealias CompressionNumber = BigInt
    |                      `- warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 92 |
 93 |     public static var possibleComponents: [Nucleotide] {
/Users/admin/builder/spi-builder-workspace/.build/checkouts/BigIntCompress/Sources/BigIntCompress/Protocols.swift:18:20: note: 'CompressionNumber' declared here
16 |
17 | public protocol Compressable: Collection where Element: Equatable {
18 |     associatedtype CompressionNumber: BigIntType, BinaryInteger
   |                    `- note: 'CompressionNumber' declared here
19 |
20 |     static var possibleComponents: [Element] { get }
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:76:12: error: subscript cannot be declared public because its index uses an internal type
74 |     }
75 |
76 |     public subscript(index: Index) -> Nucleotide {
   |            `- error: subscript cannot be declared public because its index uses an internal type
77 |         return self.complementBit ? !self.units[index] : self.units[index]
78 |     }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:43:16: warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'DNAGenome' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 41 |     }
 42 |
 43 |     public var hashValue: Int {
    |                `- warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'DNAGenome' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 44 |         return self.bigIntValue.hashValue
 45 |     }
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:11:15: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
 9 | import BigInt
10 |
11 | public struct DNAGenome: Genome, BigIntConvertible, CustomStringConvertible {
   |               `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
12 |     typealias Alphabet = DNAAlphabet
13 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:11:15: error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
 9 | import BigInt
10 |
11 | public struct DNAGenome: Genome, BigIntConvertible, CustomStringConvertible {
   |               `- error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
12 |     typealias Alphabet = DNAAlphabet
13 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: note: mark the type alias as 'public' to satisfy the requirement
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:11:15: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
 9 | import BigInt
10 |
11 | public struct DNAGenome: Genome, BigIntConvertible, CustomStringConvertible {
   |               `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
12 |     typealias Alphabet = DNAAlphabet
13 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
[#DeprecatedDeclaration]: <https://docs.swift.org/compiler/documentation/diagnostics/deprecated-declaration>
[60/62] Compiling BioSwift DNAGenome.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:23:16: error: property cannot be declared public because its type uses an internal type
21 |     public internal(set) var  bigIntValue: BigInt
22 |
23 |     public var startIndex: Index {
   |                `- error: property cannot be declared public because its type uses an internal type
24 |         return self.units.startIndex
25 |     }
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:27:16: error: property cannot be declared public because its type uses an internal type
25 |     }
26 |
27 |     public var endIndex: Index {
   |                `- error: property cannot be declared public because its type uses an internal type
28 |         return self.units.endIndex
29 |     }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:91:22: warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 89 | extension Genome {
 90 |
 91 |     public typealias CompressionNumber = BigInt
    |                      `- warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 92 |
 93 |     public static var possibleComponents: [Nucleotide] {
/Users/admin/builder/spi-builder-workspace/.build/checkouts/BigIntCompress/Sources/BigIntCompress/Protocols.swift:18:20: note: 'CompressionNumber' declared here
16 |
17 | public protocol Compressable: Collection where Element: Equatable {
18 |     associatedtype CompressionNumber: BigIntType, BinaryInteger
   |                    `- note: 'CompressionNumber' declared here
19 |
20 |     static var possibleComponents: [Element] { get }
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:76:12: error: subscript cannot be declared public because its index uses an internal type
74 |     }
75 |
76 |     public subscript(index: Index) -> Nucleotide {
   |            `- error: subscript cannot be declared public because its index uses an internal type
77 |         return self.complementBit ? !self.units[index] : self.units[index]
78 |     }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:43:16: warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'DNAGenome' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 41 |     }
 42 |
 43 |     public var hashValue: Int {
    |                `- warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'DNAGenome' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 44 |         return self.bigIntValue.hashValue
 45 |     }
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:11:15: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
 9 | import BigInt
10 |
11 | public struct DNAGenome: Genome, BigIntConvertible, CustomStringConvertible {
   |               `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
12 |     typealias Alphabet = DNAAlphabet
13 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:11:15: error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
 9 | import BigInt
10 |
11 | public struct DNAGenome: Genome, BigIntConvertible, CustomStringConvertible {
   |               `- error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
12 |     typealias Alphabet = DNAAlphabet
13 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: note: mark the type alias as 'public' to satisfy the requirement
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
/Users/admin/builder/spi-builder-workspace/Sources/DNAGenome.swift:11:15: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
 9 | import BigInt
10 |
11 | public struct DNAGenome: Genome, BigIntConvertible, CustomStringConvertible {
   |               `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
12 |     typealias Alphabet = DNAAlphabet
13 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
[#DeprecatedDeclaration]: <https://docs.swift.org/compiler/documentation/diagnostics/deprecated-declaration>
[61/62] Compiling BioSwift BioSequence+Codec.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:75:1: warning: extension declares a conformance of imported type 'BigInt' to imported protocol 'BigIntType'; this will not behave correctly if the owners of 'BigInt' introduce this conformance in the future
 73 | // MARK: Compressable
 74 |
 75 | extension BigInt: BigIntType {
    | |- warning: extension declares a conformance of imported type 'BigInt' to imported protocol 'BigIntType'; this will not behave correctly if the owners of 'BigInt' introduce this conformance in the future
    | `- note: add '@retroactive' to silence this warning
 76 |     public var hexString: String {
 77 |         return String(self, radix: 16)
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:91:22: warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 89 | extension Genome {
 90 |
 91 |     public typealias CompressionNumber = BigInt
    |                      `- warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 92 |
 93 |     public static var possibleComponents: [Nucleotide] {
/Users/admin/builder/spi-builder-workspace/.build/checkouts/BigIntCompress/Sources/BigIntCompress/Protocols.swift:18:20: note: 'CompressionNumber' declared here
16 |
17 | public protocol Compressable: Collection where Element: Equatable {
18 |     associatedtype CompressionNumber: BigIntType, BinaryInteger
   |                    `- note: 'CompressionNumber' declared here
19 |
20 |     static var possibleComponents: [Element] { get }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:98:1: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
 96 | }
 97 |
 98 | extension Protein: Compressable {
    | `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
 99 |     public typealias CompressionNumber = BigInt
100 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:98:1: error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
 96 | }
 97 |
 98 | extension Protein: Compressable {
    | `- error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
 99 |     public typealias CompressionNumber = BigInt
100 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: note: mark the type alias as 'public' to satisfy the requirement
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:98:1: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
 96 | }
 97 |
 98 | extension Protein: Compressable {
    | `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
 99 |     public typealias CompressionNumber = BigInt
100 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
[62/62] Compiling BioSwift BioSequence+Pattern.swift
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:75:1: warning: extension declares a conformance of imported type 'BigInt' to imported protocol 'BigIntType'; this will not behave correctly if the owners of 'BigInt' introduce this conformance in the future
 73 | // MARK: Compressable
 74 |
 75 | extension BigInt: BigIntType {
    | |- warning: extension declares a conformance of imported type 'BigInt' to imported protocol 'BigIntType'; this will not behave correctly if the owners of 'BigInt' introduce this conformance in the future
    | `- note: add '@retroactive' to silence this warning
 76 |     public var hexString: String {
 77 |         return String(self, radix: 16)
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:91:22: warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 89 | extension Genome {
 90 |
 91 |     public typealias CompressionNumber = BigInt
    |                      `- warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 92 |
 93 |     public static var possibleComponents: [Nucleotide] {
/Users/admin/builder/spi-builder-workspace/.build/checkouts/BigIntCompress/Sources/BigIntCompress/Protocols.swift:18:20: note: 'CompressionNumber' declared here
16 |
17 | public protocol Compressable: Collection where Element: Equatable {
18 |     associatedtype CompressionNumber: BigIntType, BinaryInteger
   |                    `- note: 'CompressionNumber' declared here
19 |
20 |     static var possibleComponents: [Element] { get }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:98:1: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
 96 | }
 97 |
 98 | extension Protein: Compressable {
    | `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
 99 |     public typealias CompressionNumber = BigInt
100 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:98:1: error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
 96 | }
 97 |
 98 | extension Protein: Compressable {
    | `- error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
 99 |     public typealias CompressionNumber = BigInt
100 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: note: mark the type alias as 'public' to satisfy the requirement
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:98:1: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
 96 | }
 97 |
 98 | extension Protein: Compressable {
    | `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
 99 |     public typealias CompressionNumber = BigInt
100 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
[63/64] Compiling BioSwift RNAGenome.swift
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:28:16: error: property cannot be declared public because its type uses an internal type
26 |     public internal(set) var  bigIntValue: BigInt
27 |
28 |     public var startIndex: Index {
   |                `- error: property cannot be declared public because its type uses an internal type
29 |         return self.units.startIndex
30 |     }
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:32:16: error: property cannot be declared public because its type uses an internal type
30 |     }
31 |
32 |     public var endIndex: Index {
   |                `- error: property cannot be declared public because its type uses an internal type
33 |         return self.units.endIndex
34 |     }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:91:22: warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 89 | extension Genome {
 90 |
 91 |     public typealias CompressionNumber = BigInt
    |                      `- warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 92 |
 93 |     public static var possibleComponents: [Nucleotide] {
/Users/admin/builder/spi-builder-workspace/.build/checkouts/BigIntCompress/Sources/BigIntCompress/Protocols.swift:18:20: note: 'CompressionNumber' declared here
16 |
17 | public protocol Compressable: Collection where Element: Equatable {
18 |     associatedtype CompressionNumber: BigIntType, BinaryInteger
   |                    `- note: 'CompressionNumber' declared here
19 |
20 |     static var possibleComponents: [Element] { get }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:81:12: error: subscript cannot be declared public because its index uses an internal type
79 |     }
80 |
81 |     public subscript(index: Index) -> Nucleotide {
   |            `- error: subscript cannot be declared public because its index uses an internal type
82 |         return self.complementBit ? !self.units[index] : self.units[index]
83 |     }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:43:16: warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'RNAGenome' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 41 |     }
 42 |
 43 |     public var hashValue: Int {
    |                `- warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'RNAGenome' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 44 |         return self.bigIntValue.hashValue
 45 |     }
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:11:15: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
 9 | import BigInt
10 |
11 | public struct RNAGenome: Genome, BigIntConvertible, CustomStringConvertible {
   |               `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
12 |     typealias Alphabet = RNAAlphabet
13 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:11:15: error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
 9 | import BigInt
10 |
11 | public struct RNAGenome: Genome, BigIntConvertible, CustomStringConvertible {
   |               `- error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
12 |     typealias Alphabet = RNAAlphabet
13 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: note: mark the type alias as 'public' to satisfy the requirement
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:11:15: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
 9 | import BigInt
10 |
11 | public struct RNAGenome: Genome, BigIntConvertible, CustomStringConvertible {
   |               `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
12 |     typealias Alphabet = RNAAlphabet
13 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
[#DeprecatedDeclaration]: <https://docs.swift.org/compiler/documentation/diagnostics/deprecated-declaration>
[64/64] Compiling BioSwift Utils.swift
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:28:16: error: property cannot be declared public because its type uses an internal type
26 |     public internal(set) var  bigIntValue: BigInt
27 |
28 |     public var startIndex: Index {
   |                `- error: property cannot be declared public because its type uses an internal type
29 |         return self.units.startIndex
30 |     }
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:32:16: error: property cannot be declared public because its type uses an internal type
30 |     }
31 |
32 |     public var endIndex: Index {
   |                `- error: property cannot be declared public because its type uses an internal type
33 |         return self.units.endIndex
34 |     }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence+Codec.swift:91:22: warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 89 | extension Genome {
 90 |
 91 |     public typealias CompressionNumber = BigInt
    |                      `- warning: typealias overriding associated type 'CompressionNumber' from protocol 'Compressable' is better expressed as same-type constraint on the protocol
 92 |
 93 |     public static var possibleComponents: [Nucleotide] {
/Users/admin/builder/spi-builder-workspace/.build/checkouts/BigIntCompress/Sources/BigIntCompress/Protocols.swift:18:20: note: 'CompressionNumber' declared here
16 |
17 | public protocol Compressable: Collection where Element: Equatable {
18 |     associatedtype CompressionNumber: BigIntType, BinaryInteger
   |                    `- note: 'CompressionNumber' declared here
19 |
20 |     static var possibleComponents: [Element] { get }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- warning: typealias overriding associated type 'Element' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 60 |     typealias SubSequence = Slice<Self>
 61 |
Swift.Collection.Element:2:16: note: 'Element' declared here
1 | protocol Collection {
2 | associatedtype Element}
  |                `- note: 'Element' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:123:22: warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
121 |
122 | extension BioSequence {
123 |     public typealias Index = Int
    |                      `- warning: typealias overriding associated type 'Index' from protocol 'Collection' is better expressed as same-type constraint on the protocol
124 |
125 |     public var startIndex: Index {
Swift.Collection.Index:2:16: note: 'Index' declared here
1 | protocol Collection {
2 | associatedtype Index : Comparable where Self.Index == Self.Indices.Element, Self.Indices.Element == Self.Indices.Index, Self.Indices.Index == Self.SubSequence.Index}
  |                `- note: 'Index' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- warning: typealias overriding associated type 'SubSequence' from protocol 'Collection' is better expressed as same-type constraint on the protocol
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
Swift.Collection.SubSequence:2:16: note: 'SubSequence' declared here
1 | protocol Collection {
2 | associatedtype SubSequence : Collection = Slice<Self> where Self.Element == Self.SubSequence.Element, Self.SubSequence == Self.SubSequence.SubSequence}
  |                `- note: 'SubSequence' declared here
3 |
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:81:12: error: subscript cannot be declared public because its index uses an internal type
79 |     }
80 |
81 |     public subscript(index: Index) -> Nucleotide {
   |            `- error: subscript cannot be declared public because its index uses an internal type
82 |         return self.complementBit ? !self.units[index] : self.units[index]
83 |     }
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:43:16: warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'RNAGenome' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 41 |     }
 42 |
 43 |     public var hashValue: Int {
    |                `- warning: 'Hashable.hashValue' is deprecated as a protocol requirement; conform type 'RNAGenome' to 'Hashable' by implementing 'hash(into:)' instead [#DeprecatedDeclaration]
 44 |         return self.bigIntValue.hashValue
 45 |     }
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:11:15: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
 9 | import BigInt
10 |
11 | public struct RNAGenome: Genome, BigIntConvertible, CustomStringConvertible {
   |               `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Collection'
12 |     typealias Alphabet = RNAAlphabet
13 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:11:15: error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
 9 | import BigInt
10 |
11 | public struct RNAGenome: Genome, BigIntConvertible, CustomStringConvertible {
   |               `- error: type alias 'SubSequence' must be declared public because it matches a requirement in public protocol 'Collection'
12 |     typealias Alphabet = RNAAlphabet
13 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:60:15: note: mark the type alias as 'public' to satisfy the requirement
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
 60 |     typealias SubSequence = Slice<Self>
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 61 |
 62 |     public init<S: Sequence>(sequence: S) where S.Element: CharConvertible {
/Users/admin/builder/spi-builder-workspace/Sources/RNAGenome.swift:11:15: error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
 9 | import BigInt
10 |
11 | public struct RNAGenome: Genome, BigIntConvertible, CustomStringConvertible {
   |               `- error: type alias 'Element' must be declared public because it matches a requirement in public protocol 'Sequence'
12 |     typealias Alphabet = RNAAlphabet
13 |
/Users/admin/builder/spi-builder-workspace/Sources/BioSequence.swift:59:15: note: mark the type alias as 'public' to satisfy the requirement
 57 |
 58 | extension BioSequence {
 59 |     typealias Element = Alphabet.Base
    |               `- note: mark the type alias as 'public' to satisfy the requirement
 60 |     typealias SubSequence = Slice<Self>
 61 |
[#DeprecatedDeclaration]: <https://docs.swift.org/compiler/documentation/diagnostics/deprecated-declaration>
warning: 'bigint': ignoring duplicate product 'BigInt' (static library)
warning: 'spi-builder-workspace': found 6 file(s) which are unhandled; explicitly declare them as resources or exclude from the target
    /Users/admin/builder/spi-builder-workspace/License.txt
    /Users/admin/builder/spi-builder-workspace/Tests/BioSwiftTests/bio_swiftTests.swift
    /Users/admin/builder/spi-builder-workspace/README.md
    /Users/admin/builder/spi-builder-workspace/Tests/LinuxMain.swift
    /Users/admin/builder/spi-builder-workspace/Tests/BioSwiftTests/extensionTests.swift
    /Users/admin/builder/spi-builder-workspace/BioSwift.svg
BUILD FAILURE 6.3 macosSpm